bcftools (1.20-2) unstable; urgency=medium

  * Team upload
  * Only recommend python-matplotlib and python3-gffutils

 -- Charles Plessy <plessy@debian.org>  Tue, 25 Jun 2024 08:34:02 +0900

bcftools (1.20-1) unstable; urgency=medium

  [ Charles Plessy ]
  * Team upload.
  * New upstream version

  [ Andreas Tille ]
  * Add missing Depends
    Closes: #1069234
  * Standards-Version: 4.7.0 (routine-update)

 -- Andreas Tille <tille@debian.org>  Thu, 18 Apr 2024 17:14:39 +0200

bcftools (1.19-1) unstable; urgency=medium

  * New upstream version 1.19
  * fix-bus-error-armhf.patch: delete: applied upstream.
  * skip_new_test_failing_on_32bit.patch: refresh.
  * tests-pluginpath.patch: refresh.
  * typo.patch: new: fix typos caught by lintian.

 -- Étienne Mollier <emollier@debian.org>  Fri, 15 Dec 2023 11:59:02 +0100

bcftools (1.18-2) unstable; urgency=medium

  * skip_new_test_failing_on_32bit.patch: refresh.
  * tests-pluginpath.patch: refresh.
  * fix-bus-error-armhf.patch: new: fix Bus errors.
    Thanks to Rob Davies (Closes: #1055669)

 -- Étienne Mollier <emollier@debian.org>  Thu, 23 Nov 2023 12:01:34 +0100

bcftools (1.18-1) unstable; urgency=medium

  * Team upload.
  * New upstream version

 -- Andreas Tille <tille@debian.org>  Wed, 08 Nov 2023 09:14:28 +0100

bcftools (1.17-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * d/lintian-overrides: update mismatched override.
  * 2to3.patch: declare forwarding unneeded.
    Only changes are the shebang and future import, making the initial
    script somewhat agnistic of the python major version, and the patch
    enforces use of python3.
  * skip_new_test_failing_on_32bit.patch: use the Bug field.
    The patch was initially documenting upstream issue with a Bug-Upstream
    field instead of using the dedicated Bug field from DEP3, confusing
    scanners to identify outstanding problems left to forward upstream.

 -- Étienne Mollier <emollier@debian.org>  Fri, 23 Jun 2023 18:27:42 +0200

bcftools (1.16-1) unstable; urgency=medium

  * Team upload.
  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 30 Sep 2022 11:48:40 +0200

bcftools (1.14-1~exp1) experimental; urgency=medium

  * Team upload.
  * New upstream version
  * Remove unnecessary Breaks/Replaces
  * Bump versioned Build-Depends: libhts-dev (>= 1.14)
  * Add lintian-override for script-with-language-extension

 -- Andreas Tille <tille@debian.org>  Tue, 07 Dec 2021 09:08:19 +0100

bcftools (1.13-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)
  * No tab in license text (routine-update)
  * watch file standard 4 (routine-update)

  [ Étienne Mollier ]
  * Standards-Version: 4.6.0 (routine-update)
  * Use secure URI in Homepage field.
  * d/control: add myself to uploaders

 -- Étienne Mollier <emollier@debian.org>  Fri, 27 Aug 2021 16:36:54 +0200

bcftools (1.11-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Versioned Build-Depends: libhts-dev (>= 1.11)

 -- Andreas Tille <tille@debian.org>  Thu, 01 Oct 2020 15:43:46 +0200

bcftools (1.10.2-4) unstable; urgency=medium

  * Fix suggested Python packages
    Closes: #965032

 -- Andreas Tille <tille@debian.org>  Tue, 14 Jul 2020 22:39:24 +0200

bcftools (1.10.2-3) unstable; urgency=medium

  * Team upload.
  * Depends on Perl demoted to Recommends
    Closes: #962834
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * debian/copyright: use spaces rather than tabs to start continuation lines.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Andreas Tille <tille@debian.org>  Wed, 17 Jun 2020 11:41:35 +0200

bcftools (1.10.2-2) unstable; urgency=medium

  * Fix build on i386 by using SSE2

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 02 Jan 2020 13:58:57 +0100

bcftools (1.10.2-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 12

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 25 Dec 2019 17:58:32 +0100

bcftools (1.10-1) unstable; urgency=medium

  * New upstream release.
  * Restore i386 as libhts/tabix has restored it.
  * Add myself as an uploader

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 16 Dec 2019 16:17:57 +0100

bcftools (1.9-2) unstable; urgency=medium

  * Team upload.
  * Remove now-unneeded lintian-override
  * Remove i386 as libhts/tabix has dropped it
  * Temporarily disable failing plugins tests
  * Remove trailing whitespace in debian/copyright
  * Standards-Version: 4.3.0, no changes needed

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 06 Aug 2019 19:32:16 +0200

bcftools (1.9-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.2.1
  * Fix Perl interpreter PATH

 -- Andreas Tille <tille@debian.org>  Tue, 04 Sep 2018 16:37:32 +0200

bcftools (1.8-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.1.4
  * debhelper 11

 -- Andreas Tille <tille@debian.org>  Fri, 20 Apr 2018 11:36:02 +0200

bcftools (1.7-2) unstable; urgency=medium

  * Team upload.
  * Follow hint of Graham Inggs to skip single test that is new in this version
    Closes: #890704

 -- Andreas Tille <tille@debian.org>  Tue, 20 Feb 2018 16:32:47 +0100

bcftools (1.7-1) unstable; urgency=medium

  * Team upload
  * New upstream version
  * Standards-Version: 4.1.3
  * d/rules: drop useless option --parallel

 -- Andreas Tille <tille@debian.org>  Sat, 17 Feb 2018 15:00:09 +0100

bcftools (1.6-3) unstable; urgency=medium

  * Team upload
  * Upload to unstable

 -- Andreas Tille <tille@debian.org>  Thu, 14 Dec 2017 16:09:29 +0100

bcftools (1.6-2) experimental; urgency=medium

  * Team upload
  * Apply patch from upstream to reduce failing tests on different
    architectures.  Addresses bug #870060

 -- Andreas Tille <tille@debian.org>  Wed, 13 Dec 2017 15:57:03 +0100

bcftools (1.6-1) experimental; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.1.2

 -- Andreas Tille <tille@debian.org>  Mon, 11 Dec 2017 13:28:56 +0100

bcftools (1.5-4) unstable; urgency=medium

  * Team upload.
  * Add debian/clean to fix FTBFSx2
  * Update patches as they were applied upstream
  * Bump versioned Build-Depends on htslib to make sure we pick up
    versioned dependency on libhts2 (Closes: #881331)

 -- Graham Inggs <ginggs@debian.org>  Fri, 10 Nov 2017 12:41:15 +0000

bcftools (1.5-3) unstable; urgency=medium

  * Team upload.
  * Versioned Build-Depends on htslib to avoid FTBFS on armel, armhf and
    ppc64el

 -- Andreas Tille <tille@debian.org>  Wed, 08 Nov 2017 08:26:51 +0100

bcftools (1.5-2) unstable; urgency=low

  * Incorporate lost changes from 1.4.1-3 (Closes: #868958)
  * Update Standards-Version to 4.1.1
  * d/control: use build profiles to mark build-dependencies
    needed only for running tests

 -- Afif Elghraoui <afif@debian.org>  Thu, 12 Oct 2017 00:14:38 -0400

bcftools (1.5-1) unstable; urgency=medium

  * migrate to Unstable

 -- Afif Elghraoui <afif@debian.org>  Sun, 01 Oct 2017 12:39:31 -0400

bcftools (1.5-1~exp1) experimental; urgency=medium

  [ Afif Elghraoui ]
  * Update packaging for new build system

  [ Andreas Tille ]
  * New upstream version
  * Bump version in Build-Depends libhts-dev from 1.3.1 to 1.5
  * Standards-Version: 4.0.0 (no changes needed)

  [Steffen Moeller ]
  * [debian/upstream/metadata] Added registry references for
    OMICtools, RRID, bio.tools

 -- Afif Elghraoui <afif@debian.org>  Tue, 08 Aug 2017 12:35:44 -0400

bcftools (1.4.1-3) unstable; urgency=medium

  * Team upload.
  * Incorporate patches from Ubuntu to fix FTBFS on some 32-bit archs.
  * Fix autopkgtests by ensuring presence of all deps.

 -- Sascha Steinbiss <satta@debian.org>  Sat, 29 Jul 2017 10:38:27 +0200

bcftools (1.4.1-2) unstable; urgency=medium

  * Team upload
  * Fix FTBFS on architectures where char is unsigned by default,
    thanks Adrian Bunk (Closes: #865060)

 -- Graham Inggs <ginggs@debian.org>  Wed, 19 Jul 2017 11:00:08 +0200

bcftools (1.4.1-1) unstable; urgency=medium

  * Team upload
  * New upstream version
    Closes: #865006
  * debhelper 10

 -- Andreas Tille <tille@debian.org>  Sun, 18 Jun 2017 21:41:36 +0200

bcftools (1.3.1-1) unstable; urgency=medium

  * Imported Upstream version 1.3.1
  * Remove backported patches
  * Refresh remaining patches
  * Bump htslib minimum dependency
  * Bump Standards-Version to 3.9.8
  * Add a manpage for the color-chrs command

 -- Afif Elghraoui <afif@debian.org>  Mon, 25 Apr 2016 22:24:50 -0700

bcftools (1.3-3) unstable; urgency=medium

  * Backport upstream patch to fix build on arm64, armel, and ppc64el
    (Closes: #812268)

 -- Afif Elghraoui <afif@debian.org>  Thu, 31 Mar 2016 00:57:18 -0700

bcftools (1.3-2) unstable; urgency=medium

  * Backport upstream patch to be able to build plugin with GSL2
  * Bump Standards-Version
  * Use encrypted protocols for VCS URLs

 -- Afif Elghraoui <afif@ghraoui.name>  Sun, 21 Feb 2016 16:35:44 -0800

bcftools (1.3-1) unstable; urgency=medium

  * New upstream release (Closes: #813465)
  * Disable building with libgsl until build issue with GSL2 is addressed
  * Update d/TODO to indicate GSL issue forwarded
  * Simplify d/rules as a result of improvements to build system
  * Update htslib minimum dependency
  * Add libhts-dev dependency for CI tests

 -- Afif Elghraoui <afif@ghraoui.name>  Wed, 03 Feb 2016 23:44:03 -0800

bcftools (1.2-2) unstable; urgency=medium

  * Fix autopkgtest dependencies
  * Declare conflict with older versions of samtools (Closes: #812328)

 -- Afif Elghraoui <afif@ghraoui.name>  Fri, 22 Jan 2016 18:52:53 -0800

bcftools (1.2-1) unstable; urgency=low

  * Initial release (Closes: #804007)

 -- Afif Elghraoui <afif@ghraoui.name>  Mon, 09 Nov 2015 23:44:39 -0800
